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FlyBase Genome Browser: D. melanogaster
Release 3.2.2; Oct 2004

Showing 100 Kbp from X, positions 100,000 to 200,000

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Examples: X:, 2L:, 2R:, 3L:, 3R:, 4:, X:8270000..8470000, 2L:3500000..3800000, FBgn0000014, FBgn0019650.
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Data Source   Chromosome:   Display: Graphic Table
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GeneMap
Cytoband:1A3 X:86828..100461 Cytoband:1A4 X:100461..111538 Cytoband:1A5 X:111538..127781 Cytoband:1A6 X:127781..141414 Cytoband:1A7 X:141414..152491 Cytoband:1A8 X:152491..168733 Cytoband:1B1 X:168733..187532 Cytoband:1B2 X:187532..206331 Gene:CG3777 X:37141..107642 Gene:y X:113947..118683 Gene:ac X:127469..128429 Gene:sc X:153498..154919 Gene:l(1)sc X:167161..168257 Gene:pcl X:193624..194880 MRNA:CG3777-RB X:37141..107642 MRNA:CG3777-RA X:100483..107642 MRNA:CG3777-RC X:100483..107642 MRNA:y-RA X:113947..118683 MRNA:ac-RA X:127469..128429 MRNA:sc-RA X:153498..154919 MRNA:l(1)sc-RA X:167161..168257 MRNA:pcl-RA X:193624..194880 Transposable_element:3S18{}4 X:185912..192038 Syntenic_region:syntenic_block:36 X:28016..286968 BAC:BACR08O05-hit X:156704..334872 Scaffold:AE003417 X:1..289016

Tiling BAC in situ Image  [Show]

Display Settings:  [Show]

Feature Tracks:  [Hide]
Gene Model subfeatures:
Gene spanCDS5prime UTR
mRNAintron3prime UTR
Genomic features:
Base rulerGene ModelNon-coding RNAs
Cytologic bandPseudogeneNatural transposon
DNA sequencetRNATransgene insertion site
Misc. Genomic features:
polyA_site mature_peptideregulatory_region
point_mutation signal_peptidesequence_variant
protein_binding_site enhancer DNA / RNA motif
rescue_fragment aberration_junction
Synteny features:
OrthologSyntenic region
Genome reagents:
Affy OligoTiling BAC
cDNA + EST GenBank Scaffold
Analysis features:
Promoter predictionGenie prediction Transposon prediction
Processed transcriptfgenesh prediction promoter
Protein BLAST alignmentHDP prediction repeat_runner_seg
Repeat regionRNAiHDP prediction repeatmasker
Genscan predictiontRNAscan prediction
Blast features:
blastx:aa_SP.hyp.drosblastx:aa_SPTR.othvertblastx:aa_SPTR.yeast
blastx:aa_SP.real.drosblastx:aa_SPTR.plantblastx:aa_TR.real.dros
blastx:aa_SPTR.drosblastx:aa_SPTR.primatetblastx:na_dbEST.insect
blastx:aa_SPTR.insectblastx:aa_SPTR.rodenttblastx:na_unigene.rodent
blastx:aa_SPTR.othinvblastx:aa_SPTR.worm
Cytology mapped features:
Other breakpoints (cytol.)Inversion breakpoints (cytol.)Gene (recomb. only)
Deleted segments (cytol.)Translocations & Transpositions (cytol.)
Duplicated segments (cytol.)Transgene insertion (cytol.)
sim4 features:
sim4:na_DGC.drossim4:na_cDNA.drossim4:na_gb.dros
sim4:na_EST.all_nr.drossim4:na_gadfly.dros.RELEASE2sim4:na_pe.dros
       

Download sequence:  [Show]   .. Fetch this map data in format: FastA, GenBank, GFF, FFF
Upload/Remote Annotations:  [Show]
Adapted from GBrowse of the Generic Model Organism Database Project.
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Generic genome browser version 1.6