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Next Generation

Maps , chromosome location of genes and other molecular items

Genes , alleles, annotated genome, proteins, their function and expression patterns.

Genome Annotations & Sequences , clones, cDNAs, maps and bulk sequence data

Aberrations , chromosomal deficiencies, duplications and other rearrangements.

Transposons , transgene constructs and insertions

Anatomy & Images including gene expression.

Stocks with specific alleles and aberrations

References to research literature.

People addresses for Drosophila researchers.

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Send comments to flybase-help AT morgan.harvard.edu

Drosophila Genomes Annotation & Sequences

D. melanogaster Features/Maps: Release 3.2.2, Oct-04
D. pseudoobscura Features/Maps: Release 1.0, Oct-04
Reports: Release 3.2.0, March-04
Primary data updated 18-Mar-04

Annotated genes and genome data, from the FlyBase Chado Annotation Database

Search [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Annotation search (all options)

: matches
Use wildcard (*) with search
Fly BLAST .. Sequence similarity search of Drosophila genomes
Batch download reports by ID or Batch download Sequences by ID .. enter a list of FlyBase IDs for reports in one batch, in various formats, including spreadsheet tables, genome sequence, and selected fields.
Search BDGP EST and DGC project cDNAs

Browse [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

GBrowse .. Generic Genome Browser for Annotated Genomes
- D. melanogaster Genome Overview
- D. pseudoobscura Genome Overview
Apollo .. Genome Annotation and Curation Tool
All Annotation reports
Protein Domain .. Predicted proteins grouped by InterPro domain by EBI
Drosophila Gene Collection (DGC)

Data [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Genome data by FTP and Rsync
FTP Chooser for Drosophila Genomic Sequence Download
ftp://flybase.net/genomes/ OR rsync://flybase.net/flybaseftp/genomes/
genomes/Drosophila_melanogaster/current/
- fasta/ .. DNA and protein sequences
- gff/ .. annotation features in GFF v.3 format
- pgsql/ .. Postgres Chado database dump
- xml-game/ .. annotation features in GAME XML (DTD txt [ 12 kb, 26-Jul-03])
genomes/Drosophila_pseudoobscura/current/
- fasta/ .. DNA and protein sequences
- gff/ .. annotation features in GFF v.3 format
- pgsql/ .. Postgres Chado database dump
Other Sequence data: ftp://flybase.net/flybase/seqs/ or by http: seqs/
Other Sequence data at BDGP: http://www.fruitfly.org/sequence/download.html
Archived Genomic clones and sequences (BACs, P1s, cosmids, YACs, STS, BDGP P insertions)
BDGP Drosophila Gene Collection cDNA clones
Release 1.0 txt [ 411 kb, 25-Jul-01] .. Release 2.0 txt [ 89 kb, 22-Aug-03]
FlyBase Gene - DGC association table (DGC_FBgn.txt) txt [ 321 kb, 26-Mar-04]

Genome Projects [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

D. melanogaster Berkeley Drosophila Genome Project (BDGP)
D. pseudoobscura The Drosophila Genome Project at the HGSC, Baylor College of Medicine
D. pseudoobscura x D. melanogaster Whole Genome Comparative Analysis at LBL Berkeley Genome Pipeline

Documents [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Annotation Release 3 Notes
Release 3.2 Update Notes
Genomic Clones and STSs Section
Drosophila Resources--obtaining clones

Send comments to us at flybase-help AT morgan.harvard.edu
FlyBase-NG uses Argos: A Replicable Genome infOrmation System

Other files

gff3 html [ 30 kb, 14-Nov-04]
gff html [ 25 kb, 23-Feb-04]
dpse_release1.0 txt [ 5 kb, 10-Nov-04]
dmel_release4.0 txt [ 7 kb, 22-Nov-04]
dmel_release3.2.2 txt [ 6 kb, 25-Oct-04]
dmel_release3.2.1 txt [ 10 kb, 06-Aug-04]
dmel_release3.2.0 txt [ 8 kb] .. shtml [ 439 b, 18-Mar-04]
dmel_release3.1.0d txt [ 6 kb, 01-Jan-04]
dmel_het_release3.2 txt [ 2 kb, 14-Nov-04]
release html [ 27 kb, 02-Jul-04]